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Summary

Lifecycle: draftEditUnder review
What this benchmark means
README.md

Public entries: Python and R. Passing coverage requires an installed inventory.

Goal: carry the site name (SITENM) onto a subject listing from collected demographics saved by a spreadsheet program.

Input: one spec.yaml reading input/dm.csv, saved as UTF-8 comma-separated text the way spreadsheet programs on Windows save it: the file starts with a byte-order mark, the invisible character U+FEFF that announces UTF-8 text, and every line ends in a carriage return and a line feed.

Variables:

  • SITENM is the name of the site the subject enrolled at, as collected, accented letters included.

Note: the input states that its file starts with a byte-order mark, so exactly that one mark is skipped and the header is read from the character after it: the first field is STUDYID, with no invisible character in front of its name. A carriage return before a line feed ends a line like the line feed alone. The listing is UTF-8 without a mark, and each of its lines ends in a line feed.

Inputs

Under review
1 source file

input/dm.csv

Edit
3 rows
input/dm.csv
STUDYIDUSUBJIDSITENM
CTXRoyal Infirmary
CTXHôpital Saint-Antoine
CTXKlinikum Nürnberg

Expected output

Under review
3 expected rows

expected/adsl.csv

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3 rows
expected/adsl.csv
STUDYIDUSUBJIDSITENM
CTXRoyal Infirmary
CTXHôpital Saint-Antoine
CTXKlinikum Nürnberg
Shaded columns are derived— = missing value

Human review and assessment

Your review

2 questions and your comments · View benchmark discussions

Mapping spec

Generated from the benchmark YAML; do not edit by hand

Dataset NameVariable NameVariable LabelTypeCodelist/Controlled TermsCoreComputational MethodOrigin
ADSLSTUDYIDStudy IdentifiercharacterCopy value from DM.STUDYID.Predecessor
ADSLUSUBJIDUnique Subject IdentifiercharacterCopy value from DM.USUBJID.Predecessor
ADSLSITENMStudy Site NamecharacterCopy value from DM.SITENM.Predecessor
VersionDateAuthorDescriptionReviewerSign-off
1.72026-10-20yamaa docs buildRead a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default
1.62026-10-17yamaa docs buildDescribe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight
1.52026-10-17yamaa docs buildName collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part
1.42026-10-15yamaa docs buildState datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks
1.32026-09-29yamaa docs buildShow study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata
1.22026-09-29yamaa docs buildClassify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived
1.12026-09-29yamaa docs buildResolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML
1.0yamaa docs buildInitial generation from spec.yaml

yamaa code

Public calls generated from benchmark.yaml; results must match the expected output

R

Edit
3 lines
library(yamaa)yamaa_spec("spec.yaml")$run()$output

Python

Edit
3 lines
import yamaayamaa.spec("spec.yaml").run().output