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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: carry the vital-sign result (AVAL) for each subject, parameter and
timepoint, with descriptions of the values for the data-definition document.
Input: standardized vital signs, one record per subject, test and timepoint, with the numeric result.
Variables:
PARAMCDis the vital-sign test code.ATPTis the timepoint, lying or standing.AVALwould be the numeric result.
Note: each record may be described by at most one of a variable's value descriptions. One description here is chosen by parameter and another by timepoint, which nothing rules out until the data arrive: the standing systolic pressure matches both, so the run stops once the results are complete and no artifact is accepted.
How to fix
Decide which description the standing systolic pressure should carry, and make the conditions exclusive, for example by naming the parameter in the standing description as well:
value_level:
- id: SYSBP
where: {PARAMCD: [SYSBP], ATPT: [AFTER 5 MIN LYING]}
- id: STANDING
where: {PARAMCD: [SYSBP, DIABP], ATPT: [AFTER 3 MIN STANDING]}
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- verification
- condition
- value_level_multiple_matches
- rule
- SUB-13
expected/error.yaml
phase: verification
condition: value_level_multiple_matches
spec_paths:
- columns.AVAL.submission.value_level
rule: SUB-13
context:
column: AVAL
failure_count: 1
entries:
- [SYSBP, STANDING]
keys:
- USUBJID: CATH-001
PARAMCD: SYSBP
ATPT: AFTER 3 MIN STANDING
Inputs
Under review1 source fileinput/vs.csv
Edit4 rows| USUBJID | VSTESTCD | VSTPT | VSSTRESN |
|---|---|---|---|
| SYSBP | AFTER 5 MIN LYING | 118 | |
| SYSBP | AFTER 3 MIN STANDING | 104 | |
| DIABP | AFTER 5 MIN LYING | 76 | |
| DIABP | AFTER 3 MIN STANDING | 70 |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADVS | USUBJID | Unique Subject Identifier | character | Copy value from VS.USUBJID. | Predecessor | ||
| ADVS | PARAMCD | Parameter Code | character | Copy value from VS.VSTESTCD. | Predecessor | ||
| ADVS | ATPT | Analysis Timepoint | character | Copy value from VS.VSTPT. | Predecessor | ||
| ADVS | AVAL | Analysis Value | numeric | Copy value from VS.VSSTRESN. | Predecessor |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |