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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: compute VISITSEQ, the sequence number of each subject's
vital-sign visits in analysis visit order.
Input: vital-sign visit records identified by subject (USUBJID) and
analysis visit number (AVISITN).
Variables:
VISITSEQwould number the subject's visits from one in analysis visit order. It names that ordering with a misspelling that matches no defined ordering, so the run is rejected before any data is read and no artifact is accepted.
How to fix
Correct the misspelled reference to the complete declared window:
row_number:
window: VISIT_ORDER
If a different ordering is intended, declare it as its own complete window or write its settings inline.
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- unknown_window
- rule
- WINDOW-1
expected/error.yaml
phase: validation
condition: unknown_window
spec_paths:
- columns.VISITSEQ.derivation.row_number.window
rule: WINDOW-1
context:
window: VISITS_ORDER
Inputs
Under review1 source fileinput/vs.csv
Edit5 rows| USUBJID | AVISITN |
|---|---|
| 1 | |
| 2 | |
| 3 | |
| 1 | |
| 2 |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADVS | USUBJID | Unique Subject Identifier | character | Copy value from VS.USUBJID. | Predecessor | ||
| ADVS | AVISITN | Analysis Visit (N) | numeric | Copy value from VS.AVISITN. | Predecessor | ||
| ADVS | VISITSEQ | Visit Sequence Number | numeric | Row number using window VISITS_ORDER. | Derived |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |