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Summary
README.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: submit DM with the collected ethnicity in a SAS transport file.
Input: one row per subject carrying the site, age, sex and ethnicity.
Variables:
SITEID,AGEandSEXare as collected.ETHNICITYis the collected ethnicity.
Note: a SAS transport variable name has at most eight characters, so the submission stops before any file is written; no name is shortened.
How to fix
Use the variable name the implementation guide publishes. SDTM names the
collected ethnicity ETHNIC:
- name: ETHNIC
type: str
label: Ethnicity
derivation: DM_RAW.ETHNICITY
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- sas_name_too_long
- rule
- DEFINE-22
expected/error.yaml
phase: validation
condition: sas_name_too_long
spec_paths:
- sdtm.specs[0].columns.ETHNICITY.submission
rule: DEFINE-22
context:
name: ETHNICITY
pattern: ^[A-Z][A-Z0-9_]{0,7}$
Inputs
Under review1 source fileinput/dm_raw.csv
Edit2 rows| STUDYID | USUBJID | SUBJID | SITEID | AGE | SEX | ETHNICITY |
|---|---|---|---|---|---|---|
| CATH | 0001 | UCSD | 34 | F | NOT HISPANIC OR LATINO | |
| CATH | 0002 | UCSD | 67 | M | HISPANIC OR LATINO |
Unexpected Output
Under review2 rows presented to the failing check - not an accepted artifactexpected/dm.csv
Edit2 rows| DOMAIN | STUDYID | USUBJID | SUBJID | SITEID | AGE | SEX | ETHNICITY |
|---|---|---|---|---|---|---|---|
| DM | CATH | 0001 | UCSD | 34 | F | NOT HISPANIC OR LATINO | |
| DM | CATH | 0002 | UCSD | 67 | M | HISPANIC OR LATINO |
Human review and assessment
| Variable Name | Variable Label | Type | Length | Controlled Terms or Format | Origin | Core | Conversion Definition | Variable Type | Variable Order | Comments for Define |
|---|---|---|---|---|---|---|---|---|---|---|
| DOMAIN | Domain Abbreviation | Char | 2 | Assigned | Req | Set constant value "DM". | SDTM | 1 | ||
| STUDYID | Study Identifier | Char | 20 | Protocol | Req | Copy value from DM_RAW.STUDYID. | SDTM | 2 | ||
| USUBJID | Unique Subject Identifier | Char | 30 | Assigned | Req | Copy value from DM_RAW.USUBJID. | SDTM | 3 | ||
| SUBJID | Subject Identifier for the Study | Char | 10 | Collected | Req | Copy value from DM_RAW.SUBJID. | SDTM | 4 | ||
| SITEID | Study Site Identifier | Char | 10 | Collected | Req | Copy value from DM_RAW.SITEID. | SDTM | 5 | ||
| AGE | Age | Num | 3 | Collected | Exp | Copy value from DM_RAW.AGE. | SDTM | 6 | ||
| SEX | Sex | Char | 1 | Collected | Req | Copy value from DM_RAW.SEX. | SDTM | 7 | ||
| ETHNICITY | Ethnicity | Char | 25 | Collected | Exp | Copy value from DM_RAW.ETHNICITY. | SDTM | 8 |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |
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