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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: derive the site name (SITE) for analysis use, in lower case.
Input: collected demographics with study and subject identifiers
and the numeric site number (SITENUM).
Variables:
SITEwould be the site name in lower case, but it is taken from the site number (SITENUM), and a number has no lower-case form.
The request is rejected before any data is read, and no artifact is accepted.
How to fix
Fold the collected site name rather than its number, once SITENM is
present in the demographics extract:
str_case:
source: DM.SITENM
to: lower
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- incompatible_input_type
- rule
- TEXT-1
expected/error.yaml
phase: validation
condition: incompatible_input_type
spec_paths:
- columns.SITE.derivation.str_case.source
rule: TEXT-1
context:
source: SITENUM
expected: str
actual: int
Inputs
Under review1 source fileinput/dm.csv
Edit4 rows| STUDYID | USUBJID | SITENUM |
|---|---|---|
| YAMAA-01 | 101 | |
| YAMAA-01 | 102 | |
| YAMAA-01 | 999 | |
| YAMAA-01 | 1000 |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADSL | STUDYID | Study Identifier | character | Copy value from DM.STUDYID. | Predecessor | ||
| ADSL | USUBJID | Unique Subject Identifier | character | Copy value from DM.USUBJID. | Predecessor | ||
| ADSL | SITE | Site Name | character | Convert SITENUM to lower case. | Derived |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |