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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: derive the reported adverse event term in title case
(AETERMTC), with a comma and an open bracket starting a word as well as
a blank.
Input: collected adverse event (AE) records carrying the reported
term (AETERM), recorded in capitals.
Variables:
AETERMTCwould be the reported term with the first letter of each word in upper case and every other letter in lower case.
Title case starts a word at every run of letters, after any character that is not a letter, so it has no list of word separators to choose; only proper case does. The request names one beside title case, so it is rejected before any data is read, and no artifact is accepted.
How to fix
Decide which characters start a word. To start one only after the
characters you list, as the SAS PROPCASE function does, ask for proper
case and keep the list:
str_case:
source: AETERM
to: proper
delimiters: " /-(.,["
PAIN,BACK then gives Pain,Back and INVESTIGATOR'S DECISION gives
Investigator's Decision. To keep title case, drop delimiters; a word
then starts after every character that is not a letter, so
INVESTIGATOR'S DECISION gives Investigator'S Decision.
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- unknown_field
- rule
- TEXT-5
expected/error.yaml
phase: validation
condition: unknown_field
spec_paths:
- columns.AETERMTC.derivation.str_case.delimiters
rule: TEXT-5
context:
field: delimiters
to: title
identifier: delimiters
Inputs
Under review1 source fileinput/ae.csv
Edit3 rows| STUDYID | USUBJID | AESEQ | AETERM |
|---|---|---|---|
| YAMAA-01 | 1 | PAIN,BACK | |
| YAMAA-01 | 2 | INVESTIGATOR'S DECISION | |
| YAMAA-01 | 1 | RASH [LEFT ARM] |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADAE | STUDYID | Study Identifier | character | Copy value from AE.STUDYID. | Predecessor | ||
| ADAE | USUBJID | Unique Subject Identifier | character | Copy value from AE.USUBJID. | Predecessor | ||
| ADAE | AESEQ | Sequence Number | numeric | Copy value from AE.AESEQ. | Predecessor | ||
| ADAE | AETERM | Reported Term for the Adverse Event | character | Copy value from AE.AETERM. | Predecessor | ||
| ADAE | AETERMTC | Reported Term in Title Case | character | Convert AETERM to title case, starting a word after any of " /-(.,[". | Derived |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |