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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: record SEX for each subject, one row per study and subject,
and require every subject to have one.
Input: collected demographics with the study and subject
identifiers and sex (SEX).
Variables:
SEXwould be the subject's recorded sex, required on every row.
Note: a column's checks are always written as a list, even when there is only one, so that each check has one way to be written and one position to be reported at. A single check written on its own is not a list, and the run is rejected before any record is read.
How to fix
Write the check as the only item of a list:
- name: SEX
type: str
derivation: DM.SEX
verifications:
- not_missing
A second check is then one more item of the same list.
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- invalid_field_type
- rule
- SCHEMA-12
expected/error.yaml
phase: validation
condition: invalid_field_type
spec_paths:
- columns.SEX.verifications
rule: SCHEMA-12
context:
expected: list
actual: mapping
Inputs
Under review1 source fileinput/dm.csv
Edit2 rows| STUDYID | USUBJID | SEX |
|---|---|---|
| YAMAA-01 | F | |
| YAMAA-01 | M |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADSL | STUDYID | Study Identifier | character | Copy value from DM.STUDYID. | Predecessor | ||
| ADSL | USUBJID | Unique Subject Identifier | character | Copy value from DM.USUBJID. | Predecessor | ||
| ADSL | SEX | Sex | character | Copy value from DM.SEX. | Predecessor |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |