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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: carry the pooled age group code (AGEGR1N) for each subject,
coded with the study's terminology for age groups.
Input: one pre-analysis row per subject with the study and subject identifiers and the pooled age group code.
Variables:
AGEGR1Nwould be the subject's pooled age group, one of the codes the terminology lists:1below 65 years,2from 65 through 80 years and3above 80 years.
Note: the age group terminology also names the SAS format a reader of the submission applies to its codes. The codes are numbers, and a format whose name begins with a dollar sign is a format for text, which cannot be applied to a number, so the name is rejected before any record is read.
How to fix
Name the numeric format the age group codes are read with: drop the leading
$ from the codelist's format_name.
- id: AGEGR1N
name: Pooled Age Group 1 (N)
data_type: integer
format_name: AGEGRN
items:
- {value: 1, decode: '<65'}
- {value: 2, decode: '65-80'}
- {value: 3, decode: '>80'}
A study that gives its readers no format name for this list omits
format_name instead.
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- value_not_permitted
- rule
- CT-12
expected/error.yaml
phase: validation
condition: value_not_permitted
spec_paths:
- codelists[0].codelists[0].format_name
rule: CT-12
context:
codelist: AGEGR1N
value: $AGEGRN
data_type: integer
Inputs
Under review1 source fileinput/adsl_raw.csv
Edit2 rows| STUDYID | USUBJID | AGEGR1N |
|---|---|---|
| YAMAA-01 | 1 | |
| YAMAA-01 | 3 |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADSL | STUDYID | Study Identifier | character | Copy value from ADSL_RAW.STUDYID. | Predecessor | ||
| ADSL | USUBJID | Unique Subject Identifier | character | Copy value from ADSL_RAW.USUBJID. | Predecessor | ||
| ADSL | AGEGR1N | Pooled Age Group 1 (N) | numeric | Pooled Age Group 1 (N) | Copy value from ADSL_RAW.AGEGR1N. | Predecessor |
| Codelist ID | Name | Value | Decode | Codelist NCI alias | Value NCI alias | Extensible | Extended value | SAS format | Dictionary | Version |
|---|---|---|---|---|---|---|---|---|---|---|
| AGEGR1N | Pooled Age Group 1 (N) | 1 | <65 | No | $AGEGRN | |||||
| AGEGR1N | Pooled Age Group 1 (N) | 2 | 65-80 | No | $AGEGRN | |||||
| AGEGR1N | Pooled Age Group 1 (N) | 3 | >80 | No | $AGEGRN |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |