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Summary

Lifecycle: reviewedEditUnder review
What this benchmark means
README.md

Public entries: Python and R. Passing coverage requires an installed inventory.

Goal: derive TRT01A, the actual treatment for the first period, as a single subject-level record from exposure records.

Input: demographics records with exposure records carrying administered treatment (EXTRT), start date (EXSTDTC), and sequence number (EXSEQ).

Variables:

  • TRT01A would be the treatment from the chosen exposure record.

Note: the administrations are placed in start-date and sequence-number order with no statement of which end supplies the treatment, so a subject whose administrations disagree has more than one possible answer. The run is rejected before any data is read and no artifact is accepted.

How to fix

State which end of the order supplies the treatment alongside the order itself. For the earliest treatment:

intermediates:
  - id: DOSING
    dataset: EX
    key: [STUDYID, USUBJID]
    order_by: [EX.EXSTDTC, EX.EXSEQ]
    keep: first

Use the latest end only when the intended result is the latest treatment.

Expected failure

Edit
the run is rejected; no artifact is accepted
expected/error.yaml
phase
validation
condition
unpaired_fields
rule
LOOKUP-10
expected/error.yaml
phase: validation
condition: unpaired_fields
spec_paths:
  - intermediates.DOSING
rule: LOOKUP-10
context:
  intermediate: DOSING
  declared:
    - order_by
  missing:
    - keep

Inputs

Under review
2 source files

input/dm.csv

Edit
1 row
input/dm.csv
STUDYIDUSUBJID
PILOT7

input/ex.csv

Edit
2 rows
input/ex.csv
STUDYIDUSUBJIDEXSEQEXTRTEXSTDTC
PILOT71Carboplatin2023-03-01
PILOT72Pemetrexed2023-03-22

Unexpected Output

Under review
No artifact is produced

No fixture files in this directory.

Shaded columns are derived— = missing value

Human review and assessment

Your review

2 questions and your comments · View benchmark discussions

Mapping spec

Generated from the benchmark YAML; do not edit by hand

Dataset NameVariable NameVariable LabelTypeCodelist/Controlled TermsCoreComputational MethodOrigin
ADSLSTUDYIDStudy IdentifiercharacterCopy value from DM.STUDYID.Predecessor
ADSLUSUBJIDUnique Subject IdentifiercharacterCopy value from DM.USUBJID.Predecessor
ADSLTRT01AActual Treatment for Period 01characterTake EXTRT from the EX record matching on STUDYID and USUBJID, ordered by EX.EXSTDTC then EX.EXSEQ, and a row with no match is an error.Derived
VersionDateAuthorDescriptionReviewerSign-off
1.72026-10-20yamaa docs buildRead a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default
1.62026-10-17yamaa docs buildDescribe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight
1.52026-10-17yamaa docs buildName collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part
1.42026-10-15yamaa docs buildState datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks
1.32026-09-29yamaa docs buildShow study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata
1.22026-09-29yamaa docs buildClassify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived
1.12026-09-29yamaa docs buildResolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML
1.0yamaa docs buildInitial generation from spec.yaml