yamaa As a clinical trial statistician or programmer, answer two short questions in Your review: the task and the inputs. Agreeing with both approves this benchmark; disagreeing with either needs a comment. Propose a fix with the Edit button on any source file, or add it to your comments.
We suggest spending no more than 5 minutes on a review. The other tabs beside Your review are background for assessment, not under review.
Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: give one row for each adverse event and medication that the
related-records dataset relates to each other: the event's sequence number
(AESEQ), the medication's (CMSEQ) and the relationship they share
(RELID).
Input: the related-records dataset (RELREC), one record for each member of a relationship: the subject, the domain and sequence number of the related record and the relationship's identifier.
Variables:
AESEQwould be the sequence number of an adverse event that is a member of the relationship.CMSEQwould be the sequence number of a medication of the same subject's same relationship.RELIDwould be the identifier of the relationship they share.
Note: the events are to pair with the medications, yet nothing says what an event and a medication must share to pair: every event would pair with every medication of every subject. The specification is rejected before any record is read and no artifact is accepted.
How to fix
Name the fields an event member and a medication member share to pair, here the subject and the relationship:
- id: PAIRS
dataset: AEMEM
inner_join: CMMEM
key: [USUBJID, RELID]
To pair every event with every medication on purpose, name a field both sides hold with one value, such as the study identifier.
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- missing_required_field
- rule
- LOOKUP-27
expected/error.yaml
phase: validation
condition: missing_required_field
spec_paths:
- intermediates.PAIRS.key
rule: LOOKUP-27
context:
field: key
class: intermediate_class
Inputs
Under review1 source fileinput/relrec.csv
Edit11 rows| STUDYID | RDOMAIN | USUBJID | IDVAR | IDVARVAL | RELTYPE | RELID |
|---|---|---|---|---|---|---|
| TOY | AE | AESEQ | 1 | — | 1 | |
| TOY | AE | AESEQ | 2 | — | 1 | |
| TOY | CM | CMSEQ | 1 | — | 1 | |
| TOY | CM | CMSEQ | 2 | — | 1 | |
| TOY | AE | AESEQ | 3 | — | 2 | |
| TOY | CM | CMSEQ | 3 | — | 2 | |
| TOY | AE | AESEQ | 4 | — | 3 | |
| TOY | CM | CMSEQ | 3 | — | 3 | |
| TOY | AE | AESEQ | 1 | — | 1 | |
| TOY | CM | CMSEQ | 1 | — | 1 | |
| TOY | CM | CMSEQ | 2 | — | 1 |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Variable Name | Variable Label | Type | Length | Controlled Terms or Format | Origin | Core | Conversion Definition | Variable Type | Variable Order | Comments for Define |
|---|---|---|---|---|---|---|---|---|---|---|
| USUBJID | Unique Subject Identifier | Char | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 1 | ||||
| AESEQ | Sequence Number of the Adverse Event | Num | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 2 | ||||
| CMSEQ | Sequence Number of the Medication | Num | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 3 | ||||
| RELID | Relationship Identifier | Char | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 4 |
| Template | Include when | USUBJID | AESEQ | CMSEQ | RELID |
|---|---|---|---|---|---|
| pairs | Copy USUBJID from the AEMEM record matching on the shared output keys, where USUBJID is derived as {'type': 'str', 'derivation': 'AEMEM.USUBJID'}, and no match yields blank | Copy AESEQ from the AEMEM record matching on the shared output keys, where AESEQ is derived as {'type': 'int', 'derivation': 'AEMEM.SEQ'}, and no match yields blank | Copy CMSEQ from the AEMEM record matching on the shared output keys, where CMSEQ is derived as {'type': 'int', 'derivation': 'CMMEM.SEQ'}, and no match yields blank | Copy RELID from the AEMEM record matching on the shared output keys, where RELID is derived as {'type': 'str', 'derivation': 'AEMEM.RELID'}, and no match yields blank |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |