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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: give one row for each adverse event with the rescue medication its
reported term calls for: the medication's sequence number in the subject's
records (CMSEQ) and its name (CMTRT).
Input: one spec.yaml over adverse events, each with its sequence number
and reported term, and concomitant medications, each with its sequence number
and name; a list gives, for each term, the sequence number of the
medication it calls for.
Variables:
CMSEQwould be the sequence number of the medication the event's term calls for.CMTRTwould be the name of that medication.
Note: the list gives a headache's medication as the number 1, but a
nausea's as the word two, which cannot be compared with a recorded
sequence number. The first nausea compared with a medication stops the run,
and no artifact is accepted.
How to fix
Write every entry of the list as the medication's sequence number:
key:
USUBJID: AE.USUBJID
CMSEQ:
mapping:
source: AE.AETERM
dict: {HEADACHE: 1, NAUSEA: 2}
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- incompatible_input_type
- rule
- LOOKUP-27
expected/error.yaml
phase: validation
condition: incompatible_input_type
spec_paths:
- intermediates.RESCUE.key.CMSEQ
rule: LOOKUP-27
context:
intermediate: RESCUE
source: CM.CMSEQ
expected: str
actual: int
Inputs
Under review2 source filesUnexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Variable Name | Variable Label | Type | Length | Controlled Terms or Format | Origin | Core | Conversion Definition | Variable Type | Variable Order | Comments for Define |
|---|---|---|---|---|---|---|---|---|---|---|
| USUBJID | Unique Subject Identifier | Char | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 1 | ||||
| AESEQ | Sequence Number of the Adverse Event | Num | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 2 | ||||
| CMSEQ | Sequence Number of the Rescue Medication | Num | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 3 | ||||
| CMTRT | Reported Name of Drug, Med, or Therapy | Char | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 4 |
| Template | Include when | USUBJID | AESEQ | CMSEQ | CMTRT |
|---|---|---|---|---|---|
| rescue | Copy USUBJID from the AE record whose USUBJID equals AE.USUBJID and CMSEQ equals the value from recode AE.AETERM: "HEADACHE" → "1", "NAUSEA" → "two"; missing values stay missing; unlisted values are errors, where USUBJID is derived as AE.USUBJID, and no match yields blank | Copy AESEQ from the AE record whose USUBJID equals AE.USUBJID and CMSEQ equals the value from recode AE.AETERM: "HEADACHE" → "1", "NAUSEA" → "two"; missing values stay missing; unlisted values are errors, where AESEQ is derived as AE.AESEQ, and no match yields blank | Copy CMSEQ from the AE record whose USUBJID equals AE.USUBJID and CMSEQ equals the value from recode AE.AETERM: "HEADACHE" → "1", "NAUSEA" → "two"; missing values stay missing; unlisted values are errors, where CMSEQ is derived as CM.CMSEQ, and no match yields blank | Copy CMTRT from the AE record whose USUBJID equals AE.USUBJID and CMSEQ equals the value from recode AE.AETERM: "HEADACHE" → "1", "NAUSEA" → "two"; missing values stay missing; unlisted values are errors, where CMTRT is derived as CM.CMTRT, and no match yields blank |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |