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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: derive the site (SITEID), the age group (AGEGR1), the numeric
sex (SEXN), the race (RACE) and the country (COUNTRY) from collected
demographics, each left blank when the collected value it reads is.
Input: one spec.yaml over collected demographics carrying a site code
written SITE- and a number, the age, the sex code, the race with its words
joined by underscores, and a lower-case country code. Some subjects lack one
of these values.
Variables:
SITEIDis the number in the collected site code; a subject with no site code has no site.AGEGR1is<65below 65 years and>=65from 65 years on; a subject with no recorded age has no age group.SEXNis 1 for male and 2 for female; a subject with no recorded sex has no numeric sex.RACEis the collected race with each underscore read as a space; a subject with no recorded race has none.COUNTRYis the collected country code in upper case; a subject with no recorded country has none.
Note: a missing collected value leaves the value derived from it blank instead of stopping the run, nothing is filled in for it, and each such blank is counted so the run reports how often it happened.
Inputs
Under review1 source fileinput/dm.csv
Edit4 rows| STUDYID | USUBJID | SITECODE | AGE | SEX | RACE | COUNTRY |
|---|---|---|---|---|---|---|
| YAMAA-01 | SITE-012 | 72 | M | WHITE | usa | |
| YAMAA-01 | SITE-007 | — | F | BLACK_OR_AFRICAN_AMERICAN | can | |
| YAMAA-01 | SITE-012 | 45 | — | ASIAN | — | |
| YAMAA-01 | — | 64 | F | — | usa |
Expected output
Under review4 expected rowsexpected/adsl.csv
Edit4 rows| STUDYID | USUBJID | SITEID | AGE | AGEGR1 | SEX | SEXN | RACE | COUNTRY |
|---|---|---|---|---|---|---|---|---|
| YAMAA-01 | 012 | 72 | >=65 | M | 1 | WHITE | USA | |
| YAMAA-01 | 007 | — | — | F | 2 | BLACK OR AFRICAN AMERICAN | CAN | |
| YAMAA-01 | 012 | 45 | <65 | — | — | ASIAN | — | |
| YAMAA-01 | — | 64 | <65 | F | 2 | — | USA |
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADSL | STUDYID | Study Identifier | character | Copy value from DM.STUDYID. | Predecessor | ||
| ADSL | USUBJID | Unique Subject Identifier | character | Copy value from DM.USUBJID. | Predecessor | ||
| ADSL | SITEID | Study Site Identifier | character | Extract capture group 1 matching ^SITE-([0-9]+)$ from DM.SITECODE. | Derived | ||
| ADSL | AGE | Age | numeric | Copy value from DM.AGE. | Predecessor | ||
| ADSL | AGEGR1 | Pooled Age Group 1 | character | Band AGE at 65 into "<65" and ">=65", intervals closed on the left. | Derived | ||
| ADSL | SEX | Sex | character | Copy value from DM.SEX. | Predecessor | ||
| ADSL | SEXN | Sex (N) | numeric | Recode DM.SEX: "M" → "1", "F" → "2"; missing values stay missing; unlisted values are errors. | Derived | ||
| ADSL | RACE | Race | character | Replace every match of _ in DM.RACE with " ". | Derived | ||
| ADSL | COUNTRY | Country | character | Convert DM.COUNTRY to upper case. | Derived |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |