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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: give each dose of study drug its analysis start date (ASTDT) and
the number of the subject's treatment period (APERIOD) whose days hold that
date.
Input: one spec.yaml over exposure records, each carrying a sequence
number (EXSEQ), the dose given (EXDOSE) and a start date (EXSTDT), and a
period table giving each subject's treatment periods, each from a first day
(APERSDT) to a last day (APEREDT).
Variables:
ASEQis the sequence number of the exposure record that gave the dose.ASTDTis the start date of the dose.APERIODis the number of the subject's period whose first and last days, both inclusive, holdASTDT. It is blank when none of the subject's periods holds the date.
Note: the analysis start date is stated once for the whole dataset, not in the rule that builds the dose rows, and only exposure records that gave a dose build rows. Each dose row still works out its own start date before its period is chosen, so the period always follows the date the output carries. A dose outside every period is kept with the period blank, and each such blank is counted so the run reports how often it happened.
Inputs
Under review2 source filesinput/ex.csv
Edit6 rows| STUDYID | USUBJID | EXSEQ | EXDOSE | EXSTDT |
|---|---|---|---|---|
| YAMAA-01 | 1 | 25 | 2025-04-01 | |
| YAMAA-01 | 2 | 0 | 2025-04-15 | |
| YAMAA-01 | 3 | 25 | 2025-04-30 | |
| YAMAA-01 | 4 | 50 | 2025-05-01 | |
| YAMAA-01 | 1 | 25 | 2025-05-20 | |
| YAMAA-01 | 2 | 25 | 2025-06-10 |
input/periods.csv
Edit3 rows| STUDYID | USUBJID | APERIOD | APERSDT | APEREDT |
|---|---|---|---|---|
| YAMAA-01 | 1 | 2025-04-01 | 2025-04-30 | |
| YAMAA-01 | 2 | 2025-05-01 | 2025-05-31 | |
| YAMAA-01 | 1 | 2025-06-01 | 2025-06-30 |
Expected output
Under review5 expected rowsexpected/adex.csv
Edit5 rows| STUDYID | USUBJID | ASEQ | ASTDT | APERIOD |
|---|---|---|---|---|
| YAMAA-01 | 1 | 2025-04-01 | 1 | |
| YAMAA-01 | 3 | 2025-04-30 | 1 | |
| YAMAA-01 | 4 | 2025-05-01 | 2 | |
| YAMAA-01 | 1 | 2025-05-20 | — | |
| YAMAA-01 | 2 | 2025-06-10 | 1 |
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADEX | STUDYID | Study Identifier | character | Set per constructed row; see the Row construction sheet. | Derived | ||
| ADEX | USUBJID | Unique Subject Identifier | character | Set per constructed row; see the Row construction sheet. | Derived | ||
| ADEX | ASEQ | Analysis Sequence Number | numeric | Set per constructed row; see the Row construction sheet. | Derived | ||
| ADEX | ASTDT | Analysis Start Date | numeric | ISO 8601 | Copy value from EX.EXSTDT. | Predecessor | |
| ADEX | APERIOD | Period | numeric | Set per constructed row; see the Row construction sheet. | Derived |
| Template | Include when | STUDYID | USUBJID | ASEQ | APERIOD |
|---|---|---|---|---|---|
| dosed | EX.EXDOSE > 0 | Copy EX.STUDYID | Copy EX.USUBJID | Copy EX.EXSEQ | Copy PERIODS.APERIOD |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |