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Summary

Lifecycle: draftEditUnder review
What this benchmark means
README.md

Public entries: Python and R. Passing coverage requires an installed inventory.

Goal: one row per subject carrying the study identifier (STUDYID) and the trial phase (PHASE), both taken from the study's settings.

Input: one spec.yaml over subject records, which carry the subject and their age (AGE) but no study column, and a study settings table holding one record: the study identifier, its title and its phase.

Variables:

  • STUDYID is the study identifier from the settings record, the same on every row.
  • PHASE is the trial phase from the settings record, the same on every row.

Note: every subject reads the settings table's one record, though the two tables share no column. A settings table with no record, or with more than one, stops the run rather than leaving the values empty or choosing a record.

Inputs

Under review
2 source files

input/study.csv

Edit
1 row
input/study.csv
STUDYIDTITLEPHASE
YAMAA-01A Study of Drug X in AdultsPHASE 2

input/subjects.csv

Edit
3 rows
input/subjects.csv
USUBJIDAGE
54
61
47

Expected output

Under review
3 expected rows

expected/adsl.csv

Edit
3 rows
expected/adsl.csv
STUDYIDUSUBJIDAGEPHASE
YAMAA-0154PHASE 2
YAMAA-0161PHASE 2
YAMAA-0147PHASE 2
Shaded columns are derived— = missing value

Human review and assessment

Your review

2 questions and your comments · View benchmark discussions

Mapping spec

Generated from the benchmark YAML; do not edit by hand

Dataset NameVariable NameVariable LabelTypeCodelist/Controlled TermsCoreComputational MethodOrigin
ADSLSTUDYIDStudy IdentifiercharacterTake STUDYID from the STUDY record matching on the shared output keys, and a row with no match is an error.Derived
ADSLUSUBJIDUnique Subject IdentifiercharacterCopy value from SUBJ.USUBJID.Predecessor
ADSLAGEAgenumericCopy value from SUBJ.AGE.Predecessor
ADSLPHASETrial PhasecharacterTake PHASE from the STUDY record matching on the shared output keys, and a row with no match is an error.Derived
VersionDateAuthorDescriptionReviewerSign-off
1.72026-10-20yamaa docs buildRead a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default
1.62026-10-17yamaa docs buildDescribe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight
1.52026-10-17yamaa docs buildName collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part
1.42026-10-15yamaa docs buildState datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks
1.32026-09-29yamaa docs buildShow study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata
1.22026-09-29yamaa docs buildClassify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived
1.12026-09-29yamaa docs buildResolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML
1.0yamaa docs buildInitial generation from spec.yaml

yamaa code

Public calls generated from benchmark.yaml; results must match the expected output

R

Edit
3 lines
library(yamaa)yamaa_spec("spec.yaml")$run()$output

Python

Edit
3 lines
import yamaayamaa.spec("spec.yaml").run().output