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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: give one row for each adverse event and medication that the
related-records dataset relates to each other: the event's sequence number
(AESEQ), the medication's (CMSEQ) and the relationship they share
(RELID).
Input: one spec.yaml over the related-records dataset (RELREC), one
record for each member of a relationship: the subject, the domain and
sequence number of the related record and the relationship's identifier.
Variables:
AESEQ: the sequence number of an adverse event that is a member of the relationship.CMSEQ: the sequence number of a medication that is a member of the same subject's same relationship.RELID: the identifier of the relationship the event and the medication share.
Note: each event of a relationship pairs with each medication of the same subject's same relationship, so a relationship gives as many rows as its events times its medications. A medication that belongs to two relationships pairs with the events of each, and two subjects that reuse one relationship identifier never pair with each other. The rows follow the events in their stored order, and each event's medications in theirs.
Inputs
Under review1 source fileinput/relrec.csv
Edit11 rows| STUDYID | RDOMAIN | USUBJID | IDVAR | IDVARVAL | RELTYPE | RELID |
|---|---|---|---|---|---|---|
| TOY | AE | AESEQ | 1 | — | 1 | |
| TOY | AE | AESEQ | 2 | — | 1 | |
| TOY | CM | CMSEQ | 1 | — | 1 | |
| TOY | CM | CMSEQ | 2 | — | 1 | |
| TOY | AE | AESEQ | 3 | — | 2 | |
| TOY | CM | CMSEQ | 3 | — | 2 | |
| TOY | AE | AESEQ | 4 | — | 3 | |
| TOY | CM | CMSEQ | 3 | — | 3 | |
| TOY | AE | AESEQ | 1 | — | 1 | |
| TOY | CM | CMSEQ | 1 | — | 1 | |
| TOY | CM | CMSEQ | 2 | — | 1 |
Expected output
Under review8 expected rowsexpected/aecm.csv
Edit8 rows| USUBJID | AESEQ | CMSEQ | RELID |
|---|---|---|---|
| 1 | 1 | 1 | |
| 1 | 2 | 1 | |
| 2 | 1 | 1 | |
| 2 | 2 | 1 | |
| 3 | 3 | 2 | |
| 4 | 3 | 3 | |
| 1 | 1 | 1 | |
| 1 | 2 | 1 |
Human review and assessment
| Variable Name | Variable Label | Type | Length | Controlled Terms or Format | Origin | Core | Conversion Definition | Variable Type | Variable Order | Comments for Define |
|---|---|---|---|---|---|---|---|---|---|---|
| USUBJID | Unique Subject Identifier | Char | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 1 | ||||
| AESEQ | Sequence Number of the Adverse Event | Num | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 2 | ||||
| CMSEQ | Sequence Number of the Medication | Num | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 3 | ||||
| RELID | Relationship Identifier | Char | Derived | Set per constructed row; see the Row construction sheet. | SDTM | 4 |
| Template | Include when | USUBJID | AESEQ | CMSEQ | RELID |
|---|---|---|---|---|---|
| pairs | Copy USUBJID from the AEMEM record matching on USUBJID and RELID, where USUBJID is derived as {'type': 'str', 'derivation': 'AEMEM.USUBJID'}, and no match yields blank | Copy AESEQ from the AEMEM record matching on USUBJID and RELID, where AESEQ is derived as {'type': 'int', 'derivation': 'AEMEM.SEQ'}, and no match yields blank | Copy CMSEQ from the AEMEM record matching on USUBJID and RELID, where CMSEQ is derived as {'type': 'int', 'derivation': 'CMMEM.SEQ'}, and no match yields blank | Copy RELID from the AEMEM record matching on USUBJID and RELID, where RELID is derived as {'type': 'str', 'derivation': 'AEMEM.RELID'}, and no match yields blank |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |