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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: give each adverse event the sequence number of the last medication
the related-records dataset relates to it (CMSEQ).
Input: one spec.yaml over adverse events, each with its sequence number
and reported term, and the related-records dataset (RELREC), one record for
each member of a relationship.
Variables:
AETERM: the reported term of the adverse event.CMSEQ: the highest sequence number among the medications that share a relationship with the event, whichever of the event's relationships they belong to, whatever order the related records list them in; empty when no relationship relates the event to a medication.
Note: every event and medication of a relationship are first paired; the pairs of one event are then read like the records of a collected dataset, keyed by the subject and the event's sequence number, and the one with the highest medication sequence number is kept.
Inputs
Under review2 source filesExpected output
Under review4 expected rowsexpected/aecm.csv
Edit4 rows| USUBJID | AESEQ | AETERM | CMSEQ |
|---|---|---|---|
| 1 | HEADACHE | 5 | |
| 2 | NAUSEA | 4 | |
| 3 | RASH | — | |
| 1 | FEVER | 1 |
Human review and assessment
| Variable Name | Variable Label | Type | Length | Controlled Terms or Format | Origin | Core | Conversion Definition | Variable Type | Variable Order | Comments for Define |
|---|---|---|---|---|---|---|---|---|---|---|
| USUBJID | Unique Subject Identifier | Char | Collected | Copy value from AE.USUBJID. | SDTM | 1 | ||||
| AESEQ | Sequence Number | Num | Collected | Copy value from AE.AESEQ. | SDTM | 2 | ||||
| AETERM | Reported Term for the Adverse Event | Char | Collected | Copy value from AE.AETERM. | SDTM | 3 | ||||
| CMSEQ | Sequence Number of the Last Related Medication | Num | Derived | Take CMSEQ from the last PAIRS record matching on USUBJID and AESEQ, ordered by PAIRS.CMSEQ, and no match yields blank. | SDTM | 4 |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |