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Summary
README.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: show how a study spec inherits through its compound level from its organization level: shared levels carry the common mapping once, and the study level wins on final wording.
Dataset: adlb.csv, ADLB analysis dataset. One record per
subject per laboratory parameter.
Input: three spec files, read root-first:
spec_organization.yamlmaps the laboratory test code, result, and unit intoPARAMCD,AVAL, andAVALU;spec_compound.yamladds field types and retitles the AVAL result;spec_study.yamlis the entry: it names the compound level as its parent, restates the AVALU unit wording, and declares the complete output.
Each level names the one level above it, so the chain reads organization, then compound, then study, and a later level wins where two levels state the same detail.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADLB | AVAL | Analysis Value | No derivation in this specification; inherited from its parent. | Derived | |||
| ADLB | AVALU | Standardized Analysis Unit | No derivation in this specification; inherited from its parent. | Derived |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |
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