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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: give each laboratory result its analysis visit (AVISIT,
AVISITN) from the window that holds its study day (ADY), next to its
parameter (PARAMCD) and value (AVAL).
Input: collected laboratory results with their study day, and a table of analysis windows, each from a first to a last study day.
Variables:
ADYwould be the study day the result was collected on.AVISITNandAVISITwould be the number and name of the window whose first and last days, both inclusive, hold that day, and blank when no window does.
Note: a window is chosen by a value of the row being built. The day it names is a field of the collected record that the dataset does not carry, so the run is rejected before any data is read; the field is never read in its place, and no artifact is accepted.
How to fix
Choose the window by the analysis day the dataset carries:
between: {value: ADY, lower: LO, upper: HI}
Or read the collected day from the record each row is built from, naming the dataset:
between: {value: LB.LBDY, lower: LO, upper: HI}
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- unknown_field
- rule
- LOOKUP-9
expected/error.yaml
phase: validation
condition: unknown_field
spec_paths:
- intermediates.WINDOW.between.value
rule: LOOKUP-9
context:
identifier: LBDY
intermediate: WINDOW
Inputs
Under review2 source filesUnexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADLB | STUDYID | Study Identifier | character | Copy value from LB.STUDYID. | Predecessor | ||
| ADLB | USUBJID | Unique Subject Identifier | character | Copy value from LB.USUBJID. | Predecessor | ||
| ADLB | LBSEQ | Sequence Number | numeric | Copy value from LB.LBSEQ. | Predecessor | ||
| ADLB | PARAMCD | Parameter Code | character | Copy value from LB.LBTESTCD. | Predecessor | ||
| ADLB | AVAL | Analysis Value | numeric | Copy value from LB.LBSTRESN. | Predecessor | ||
| ADLB | ADY | Analysis Relative Day | numeric | Copy value from LB.LBDY. | Predecessor | ||
| ADLB | AVISITN | Analysis Visit (N) | numeric | Take AVISITN from the WINDOWS record matching on STUDYID, where LBDY falls within LO to HI, and no match yields blank. | Derived | ||
| ADLB | AVISIT | Analysis Visit | character | Take AVISIT from the WINDOWS record matching on STUDYID, where LBDY falls within LO to HI, and no match yields blank. | Derived |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |