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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: build a subject listing carrying SITEID and AGE from
demographics received as a Dataset-JSON file.
Input: the received demographics input/dm.ndjson, a Clinical Data
Interchange Standards Consortium (CDISC) Dataset-JSON 1.1 file in its
newline-delimited form: the first line describes the columns, and each
later line is one record. A record holds fewer values than the file
declares.
Variables:
SITEIDwould identify the site where the subject enrolled. The rejected file produces no output value.AGEwould give the subject's age in whole years. The rejected file produces no output value.
A record lists its values in column order, so a record with a value too few does not say which column lost its value: reading the rest in order could put a value under the wrong column. The file is rejected while it is read, naming the record, and no artifact is accepted.
How to fix
Ask the sender to write every record with one value per column, writing an
absent value as null rather than leaving it out:
["PILOT7", "P7-742", "102", null]
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- ingest
- condition
- source_dataset_json_invalid
- rule
- DSJSON-5
expected/error.yaml
phase: ingest
condition: source_dataset_json_invalid
spec_paths:
- input.DM.path
rule: DSJSON-5
context:
dataset: DM
path: input/dm.ndjson
cause: row_width
record: 2
Inputs
Under review1 source fileinput/dm.ndjson
Edit{"datasetJSONCreationDateTime": "2026-09-30T10:15:00", "datasetJSONVersion": "1.1.0", "fileOID": "www.example.org/PILOT7/DM", "sourceSystem": {"name": "Example EDC", "version": "5.1"}, "studyOID": "PILOT7", "metaDataVersionOID": "MDV.1", "itemGroupOID": "IG.DM", "records": 2, "name": "DM", "label": "Demographics", "columns": [{"itemOID": "IT.DM.STUDYID", "name": "STUDYID", "label": "Study Identifier", "dataType": "string", "length": 6, "keySequence": 1}, {"itemOID": "IT.DM.USUBJID", "name": "USUBJID", "label": "Unique Subject Identifier", "dataType": "string", "length": 6, "keySequence": 2}, {"itemOID": "IT.DM.SITEID", "name": "SITEID", "label": "Study Site Identifier", "dataType": "string", "length": 3}, {"itemOID": "IT.DM.AGE", "name": "AGE", "label": "Age", "dataType": "integer", "length": 3}]}
["PILOT7", "P7-741", "101", 24]
["PILOT7", "P7-742", "102"]
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Dataset Name | Variable Name | Variable Label | Type | Codelist/Controlled Terms | Core | Computational Method | Origin |
|---|---|---|---|---|---|---|---|
| ADSL | STUDYID | Study Identifier | character | Copy value from DM.STUDYID. | Predecessor | ||
| ADSL | USUBJID | Unique Subject Identifier | character | Copy value from DM.USUBJID. | Predecessor | ||
| ADSL | SITEID | Study Site Identifier | character | Copy value from DM.SITEID. | Predecessor | ||
| ADSL | AGE | Age | numeric | Copy value from DM.AGE. | Predecessor |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |