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Summary
EditUnder reviewWhat this benchmark meansREADME.mdPublic entries: Python and R. Passing coverage requires an installed inventory.
Goal: build the demographics domain with each subject's sex (SEX),
restricted to the values of the study's sex codelist.
Input: collected demographics, one record per subject, and the study's codelists in the project file.
Variables:
DOMAINisDMon every record.SEXwould be the sex as collected, one of the codelist's values.
Note: the sex codelist gives the text that F and M stand for, but
not the text for U, which was added later. A list whose values carry their
meaning and one whose values are their own meaning are different kinds of
list, and this one is both at once, so the run is rejected before any data
is read; no artifact is accepted.
How to fix
Give every value its text:
items:
- value: F
decode: Female
- value: M
decode: Male
- value: U
decode: Unknown
Expected failure
Editthe run is rejected; no artifact is acceptedexpected/error.yaml- phase
- validation
- condition
- codelist_partial_item_field
- rule
- CT-5
expected/error.yaml
phase: validation
condition: codelist_partial_item_field
spec_paths:
- codelists[0].codelists[0]
rule: CT-5
context:
codelist: SEX
field: decode
Inputs
Under review1 source fileinput/dm_raw.csv
Edit2 rows| STUDYID | USUBJID | SEX |
|---|---|---|
| YAMAA-01 | F | |
| YAMAA-01 | U |
Unexpected Output
Under reviewNo artifact is producedNo fixture files in this directory.
Human review and assessment
| Variable Name | Variable Label | Type | Length | Controlled Terms or Format | Origin | Core | Conversion Definition | Variable Type | Variable Order | Comments for Define |
|---|---|---|---|---|---|---|---|---|---|---|
| DOMAIN | Domain Abbreviation | Char | 2 | Assigned | Req | Set constant value "DM". | SDTM | 1 | ||
| STUDYID | Study Identifier | Char | 8 | Protocol | Req | Copy value from RAW.STUDYID. | SDTM | 2 | ||
| USUBJID | Unique Subject Identifier | Char | 12 | Assigned | Req | Copy value from RAW.USUBJID. | SDTM | 3 | ||
| SEX | Sex | Char | 1 | Sex | Collected | Req | Copy value from RAW.SEX. | SDTM | 4 |
| Codelist ID | Name | Value | Decode | Codelist NCI alias | Value NCI alias | Extensible | Extended value | SAS format | Dictionary | Version |
|---|---|---|---|---|---|---|---|---|---|---|
| SEX | Sex | F | Female | No | ||||||
| SEX | Sex | M | Male | No | ||||||
| SEX | Sex | U | No |
| Version | Date | Author | Description | Reviewer | Sign-off |
|---|---|---|---|---|---|
| 1.7 | 2026-10-20 | yamaa docs build | Read a specification in the 1.0 surface as its 0.5 counterpart; state that missing values stay missing where a mapping declares no missing handler, and leave out a declared missing answer that restates a handler's default | ||
| 1.6 | 2026-10-17 | yamaa docs build | Describe collected date parts written as ISO 8601 date text and times of day counted in seconds since midnight | ||
| 1.5 | 2026-10-17 | yamaa docs build | Name collected precision in words instead of letter codes; state imputation fallbacks, minimum source precision, bounds ignored outside the collected period, and invalid text with no handler as an error; describe date and datetime shifts, imputation flag codes, and partial text giving no date part | ||
| 1.4 | 2026-10-15 | yamaa docs build | State datetime precision codes through the hour and minute, and complete only the time parts a collected datetime lacks | ||
| 1.3 | 2026-09-29 | yamaa docs build | Show study codelist names, external dictionaries, and ISO 8601 formats in variable rows; list the document's codelist values and metadata | ||
| 1.2 | 2026-09-29 | yamaa docs build | Classify ADaM copies from a declared input as Predecessor and recodes as Derived, and SDTM recodes of locally derived columns as Derived | ||
| 1.1 | 2026-09-29 | yamaa docs build | Resolve lookups into the donor record they select, and give every derivation shape a plain-language rule instead of its raw YAML | ||
| 1.0 | yamaa docs build | Initial generation from spec.yaml |